stcrpy package
Subpackages
- stcrpy.tcr_datasets package
- stcrpy.tcr_formats package
- stcrpy.tcr_geometry package
- Subpackages
- Submodules
- stcrpy.tcr_geometry.TCRCoM module
- stcrpy.tcr_geometry.TCRDock module
- stcrpy.tcr_geometry.TCRGeom module
- stcrpy.tcr_geometry.TCRGeomFiltering module
- Module contents
- stcrpy.tcr_interactions package
- stcrpy.tcr_methods package
- stcrpy.tcr_metrics package
- stcrpy.tcr_ml package
- stcrpy.tcr_processing package
- Subpackages
- Submodules
- stcrpy.tcr_processing.AGchain module
- stcrpy.tcr_processing.Chemical_components module
- stcrpy.tcr_processing.Entity module
- stcrpy.tcr_processing.Fragment module
- stcrpy.tcr_processing.Holder module
- stcrpy.tcr_processing.MHC module
- stcrpy.tcr_processing.MHCchain module
MHCchainMHCchain.add_unnumbered()MHCchain.analyse()MHCchain.annotate_children()MHCchain.get_TCR()MHCchain.get_allele_assignments()MHCchain.get_antigen()MHCchain.get_chains()MHCchain.get_fragments()MHCchain.get_sequence()MHCchain.get_unnumbered()MHCchain.is_bound()MHCchain.set_chain_type()MHCchain.set_engineered()MHCchain.set_sequence()
- stcrpy.tcr_processing.Model module
- stcrpy.tcr_processing.Select module
- stcrpy.tcr_processing.TCR module
TCRTCR.calculate_docking_geometry()TCR.get_CDRs()TCR.get_MHC()TCR.get_MHC_allele_assignments()TCR.get_TCR_type()TCR.get_antigen()TCR.get_atoms()TCR.get_chains()TCR.get_frameworks()TCR.get_germline_assignments()TCR.get_germlines_and_alleles()TCR.get_interaction_heatmap()TCR.get_pitch_angle()TCR.get_residues()TCR.get_scanning_angle()TCR.is_bound()TCR.profile_MHC_interactions()TCR.profile_TCR_interactions()TCR.profile_peptide_interactions()TCR.save()TCR.score_docking_geometry()
abTCRdbTCRgdTCR
- stcrpy.tcr_processing.TCRIO module
- stcrpy.tcr_processing.TCRParser module
- stcrpy.tcr_processing.TCRStructure module
TCRStructureTCRStructure.get_MHCs()TCRStructure.get_TCRchains()TCRStructure.get_TCRs()TCRStructure.get_antigens()TCRStructure.get_atoms()TCRStructure.get_chains()TCRStructure.get_header()TCRStructure.get_holders()TCRStructure.get_models()TCRStructure.get_residues()TCRStructure.get_seq()TCRStructure.get_unpaired_TCRchains()TCRStructure.set_header()
- stcrpy.tcr_processing.TCRchain module
TCRchainTCRchain.add_unnumbered()TCRchain.analyse()TCRchain.annotate_children()TCRchain.get_CDRs()TCRchain.get_MHC()TCRchain.get_antigen()TCRchain.get_fragments()TCRchain.get_frameworks()TCRchain.get_germline_assignments()TCRchain.get_sequence()TCRchain.get_unnumbered()TCRchain.is_bound()TCRchain.is_engineered()TCRchain.set_chain_type()TCRchain.set_engineered()TCRchain.set_sequence()
- stcrpy.tcr_processing.annotate module
- Module contents
- stcrpy.utils package